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6NKL

2.2 A resolution structure of VapBC-1 from nontypeable Haemophilus influenzae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-04
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0000
Spacegroup nameP 21 21 21
Unit cell lengths43.880, 57.325, 175.745
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.010 - 2.200
R-factor0.1885
Rwork0.186
R-free0.23380
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ecd
Data reduction softwareXDS
Data scaling softwareAimless (0.6.3)
Phasing softwarePHASER (2.8.2)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.01048.0102.270
High resolution limit [Å]2.2009.0702.200
Rmerge0.1680.0641.613
Number of reflections233884071966
<I/σ(I)>10.9
Completeness [%]100.099.7100
Redundancy1310.713.7
CC(1/2)0.9980.9960.784
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP529120% (w/v) PEG 4000, 0.1 M sodium acetate, 0.2 M ammonium acetate

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PDB entries from 2024-05-15

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