6N55
Crystal structure of human uridine-cytidine kinase 2 complexed with 2'-azidouridine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 198 |
Detector technology | CCD |
Collection date | 2017-12-01 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9790 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 92.747, 85.764, 153.367 |
Unit cell angles | 90.00, 95.39, 90.00 |
Refinement procedure
Resolution | 38.500 - 3.085 |
R-factor | 0.2136 |
Rwork | 0.211 |
R-free | 0.25800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1uj2 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.564 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.150 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmeas | 0.105 | 0.723 |
Rpim | 0.055 | 0.389 |
Number of reflections | 43747 | 2171 |
<I/σ(I)> | 22.4 | 1.85 |
Completeness [%] | 99.8 | 100 |
Redundancy | 3.7 | 3.4 |
CC(1/2) | 0.986 | 0.740 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 50 mM BIS-TRIS pH 6.5, 25 mM ammonium sulfate, 32% pentaerythritol ethoxylate (15/4 EO/OH) |