6N1C
Crystal structure of Inorganic pyrophosphatase from Legionella pneumophila Philadelphia 1
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU FR-E+ SUPERBRIGHT |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2018-05-11 |
| Detector | RIGAKU SATURN 944+ |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 64.080, 119.940, 74.900 |
| Unit cell angles | 90.00, 109.59, 90.00 |
Refinement procedure
| Resolution | 40.967 - 2.000 |
| R-factor | 0.1945 |
| Rwork | 0.193 |
| R-free | 0.23210 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4xel as per Morda |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.880 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | MoRDa |
| Refinement software | PHENIX ((dev_3304)) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 40.967 | 40.967 | 2.050 |
| High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
| Rmerge | 0.048 | 0.024 | 0.623 |
| Rmeas | 0.053 | 0.026 | 0.713 |
| Number of reflections | 71673 | 825 | 5277 |
| <I/σ(I)> | 19.31 | 60.1 | 2.25 |
| Completeness [%] | 99.5 | 97.6 | 99.9 |
| Redundancy | 6.018 | 6.291 | 3.994 |
| CC(1/2) | 0.999 | 0.999 | 0.785 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 285 | Molecular dimensions Morpheus screen, H12: 12.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD: 20mM of each sodium L-glutamate, DL-alanine, glycine, DL-lysine HCl, DL-serine: 100mM Bicine/Trizma base pH 8.5: LepnA.00023.a.B1.PS38421 at 21.3mg/ml: cryo: direct: tray 299905h12: puck hgu1-7 |






