6MFR
Human Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-06-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979500 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 109.174, 137.960, 153.122 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.422 - 3.600 |
R-factor | 0.2413 |
Rwork | 0.239 |
R-free | 0.28270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4w5o |
RMSD bond length | 0.003 |
RMSD bond angle | 0.851 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.570 | 3.810 |
High resolution limit [Å] | 3.590 | 3.590 |
Rmerge | 0.193 | 0.780 |
Rpim | 0.076 | 0.311 |
Number of reflections | 27731 | 4136 |
<I/σ(I)> | 8.5 | 2.9 |
Completeness [%] | 98.7 | 92.6 |
Redundancy | 7.4 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 10% PEG3350, 50mM Tris pH8, 20mM MgCl2, 75mM Phenol |