Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MDT

Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P63 space group

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-22
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameP 63
Unit cell lengths129.343, 129.343, 313.071
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution41.956 - 3.816
R-factor0.2952
Rwork0.294
R-free0.31110
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4r26 5cez
RMSD bond length0.004
RMSD bond angle0.911
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.940
High resolution limit [Å]3.8003.800
Number of reflections287472842
<I/σ(I)>6.41.8
Completeness [%]99.999.9
Redundancy10.99.6
CC(1/2)0.7700.270
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP277.150.1M Calcium acetate, 0.1M MES (pH 6), 15%(v/v) PEG400

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon