6M3Z
X-ray structure of a Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in milnacipran bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-31 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 96.997, 141.599, 168.249 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.550 - 3.110 |
R-factor | 0.2242 |
Rwork | 0.222 |
R-free | 0.26350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xnx |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.552 | 48.550 | 3.220 |
High resolution limit [Å] | 3.106 | 11.620 | 3.110 |
Rmerge | 0.166 | 0.041 | 1.595 |
Rmeas | 0.185 | 0.047 | 1.762 |
Rpim | 0.079 | 0.022 | 0.740 |
Total number of observations | 4079 | 24126 | |
Number of reflections | 42441 | 903 | 4378 |
<I/σ(I)> | 6.5 | 28.9 | 1 |
Completeness [%] | 99.7 | 96.9 | 99 |
Redundancy | 5.4 | 4.5 | 5.5 |
CC(1/2) | 0.996 | 0.997 | 0.437 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | 0.1M MOPS pH 7.0, 32 PEG 600 |