6LE3
Crystal structure of gluconate 5-dehydrogenase from Lentibacter algarum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.988 |
Spacegroup name | P 1 |
Unit cell lengths | 55.424, 55.484, 79.158 |
Unit cell angles | 100.51, 105.66, 97.99 |
Refinement procedure
Resolution | 37.400 - 2.100 |
R-factor | 0.2056 |
Rwork | 0.203 |
R-free | 0.25400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3uf0 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.127 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.111 | 0.407 |
Rpim | 0.070 | 0.272 |
Number of reflections | 49082 | 2093 |
<I/σ(I)> | 10.34 | 3.36 |
Completeness [%] | 96.7 | |
Redundancy | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 1.2 M Ammonium Chloride, 0.1 M Sodium Acetate, pH 4.6 |