6KR2
Crystal structure of Dengue virus nonstructural protein NS5 (form 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-05-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 87.219, 146.418, 98.388 |
Unit cell angles | 90.00, 105.80, 90.00 |
Refinement procedure
Resolution | 44.818 - 3.060 |
R-factor | 0.2268 |
Rwork | 0.224 |
R-free | 0.27490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k6m 4v0q |
RMSD bond length | 0.011 |
RMSD bond angle | 1.420 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155: ???) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.000 | 60.000 | 3.170 |
High resolution limit [Å] | 3.060 | 6.590 | 3.060 |
Rmerge | 0.160 | 0.049 | 0.500 |
Rmeas | 0.191 | 0.059 | 0.598 |
Rpim | 0.103 | 0.032 | 0.325 |
Total number of observations | 143708 | ||
Number of reflections | 44340 | 4427 | 4431 |
<I/σ(I)> | 4.7 | ||
Completeness [%] | 98.3 | 96.4 | 99.1 |
Redundancy | 3.2 | 3.2 | 3.2 |
CC(1/2) | 0.997 | 0.781 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 283 | PEG2000 |