6KB2
X-ray structure of human PPARalpha ligand binding domain-Wy14643 co-crystals obtained by soaking
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE BL-17A |
| Synchrotron site | Photon Factory |
| Beamline | BL-17A |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-03-16 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 1.00000 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.164, 62.681, 53.667 |
| Unit cell angles | 90.00, 105.56, 90.00 |
Refinement procedure
| Resolution | 32.998 - 1.950 |
| R-factor | 0.2066 |
| Rwork | 0.205 |
| R-free | 0.24400 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3vi8 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.21) |
| Phasing software | PHASER (2.7.16) |
| Refinement software | PHENIX (1.11.1-2575-000) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 43.510 | 43.510 | 2.000 |
| High resolution limit [Å] | 1.950 | 8.940 | 1.950 |
| Rmerge | 0.027 | 0.011 | 0.344 |
| Rmeas | 0.033 | 0.013 | 0.407 |
| Rpim | 0.017 | 0.007 | 0.215 |
| Number of reflections | 20767 | 217 | 1462 |
| <I/σ(I)> | 21.6 | 81 | 3.1 |
| Completeness [%] | 98.3 | 94 | 98.3 |
| Redundancy | 3.5 | 3.3 | 3.5 |
| CC(1/2) | 1.000 | 1.000 | 0.944 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 277 | 0.1M HEPES (pH 7.0), 25%(w/v) PEG3350 |






