6K7Q
Crystal structure of thymidylate synthase from shrimp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97931 |
Spacegroup name | P 1 |
Unit cell lengths | 103.270, 103.458, 125.768 |
Unit cell angles | 77.40, 84.81, 61.43 |
Refinement procedure
Resolution | 89.030 - 2.270 |
R-factor | 0.219 |
Rwork | 0.218 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1hvy |
RMSD bond length | 0.010 |
RMSD bond angle | 1.100 |
Data reduction software | XDS (Jan 26, 2018, built on 20180409) |
Data scaling software | Aimless (version 0.5.29) |
Phasing software | PHASER (2.7.17) |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 122.723 | 2.277 |
High resolution limit [Å] | 2.269 | 2.269 |
Rmeas | 0.076 | 0.391 |
Rpim | 0.054 | 0.276 |
Number of reflections | 200394 | 1671 |
<I/σ(I)> | 9.3 | 2.8 |
Completeness [%] | 97.1 | 80.1 |
Redundancy | 2 | 2 |
CC(1/2) | 0.990 | 0.910 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1 ul protein solution (20 mg/ml in 10 mM HEPES, 150 mM NaCl, 1 mM DTT, pH 7.5) and 1 ul reservoir solution containing 18% (w/v) PEG 3350, 200 mM (NH4)2SO4, 100 mM HEPES, pH 7.5 |