6JHP
Crystal structure of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-14 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 103.250, 173.043, 177.277 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.784 - 2.559 |
R-factor | 0.1696 |
Rwork | 0.167 |
R-free | 0.22630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fnq |
RMSD bond length | 0.009 |
RMSD bond angle | 1.010 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.784 | 2.650 |
High resolution limit [Å] | 2.559 | 2.559 |
Rmerge | 0.886 | 0.634 |
Number of reflections | 94877 | 6607 |
<I/σ(I)> | 5.87 | |
Completeness [%] | 92.2 | |
Redundancy | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.2 | 293 | 1.8 M monosodium phosphate-dipotassium phosphate, pH 8.2 |