6I9N
JmjC domain-containing protein 5 (JMJD5) in complex with Mn and L-2-hydroxyglutarate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-03-05 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.91742 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.642, 64.428, 77.543 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.808 - 1.361 |
R-factor | 0.1501 |
Rwork | 0.150 |
R-free | 0.15890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gjz |
RMSD bond length | 0.008 |
RMSD bond angle | 1.000 |
Data reduction software | HKL-2000 (706E) |
Data scaling software | HKL-2000 (706E) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.808 | 1.410 |
High resolution limit [Å] | 1.340 | 1.340 |
Rmerge | 0.081 | 0.529 |
Rmeas | 0.086 | 0.561 |
Rpim | 0.028 | 0.186 |
Number of reflections | 53414 | 5302 |
<I/σ(I)> | 24.125 | 4.2 |
Completeness [%] | 98.8 | 99.4 |
Redundancy | 9.6 | 8.9 |
CC(1/2) | 0.997 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 0.1 M Bis-Tris pH 6.5, 15.0 % PEG3350, 0.002 M MnCl2 |