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6I8L

Crystal structure of Spindlin1 in complex with the inhibitor TD001851a

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-03
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.96871
Spacegroup nameP 43 21 2
Unit cell lengths115.350, 115.350, 43.760
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.861 - 1.580
R-factor0.1882
Rwork0.187
R-free0.20680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4mzg
RMSD bond length0.019
RMSD bond angle1.475
Data reduction softwareXDS
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.7.16)
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]34.86134.8601.620
High resolution limit [Å]1.5807.0701.580
Rmerge0.0970.0252.215
Rmeas0.1020.0262.305
Rpim0.0280.0080.635
Number of reflections410795503007
<I/σ(I)>15
Completeness [%]100.099.3100
Redundancy12.810.813.1
CC(1/2)0.9991.0000.639
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.527755% MPD and 0.1 M SPG buffer

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PDB entries from 2024-05-15

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