6HDU
Crystal structure of human Rab38 in complex with GTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-31 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.045, 70.993, 74.487 |
Unit cell angles | 90.00, 102.21, 90.00 |
Refinement procedure
Resolution | 49.280 - 1.793 |
R-factor | 0.1897 |
Rwork | 0.188 |
R-free | 0.21230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ff8 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.796 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.280 | 1.830 |
High resolution limit [Å] | 1.790 | 1.790 |
Rmerge | 0.075 | 0.652 |
Rmeas | 0.082 | 0.718 |
Number of reflections | 66651 | |
<I/σ(I)> | 12.9 | |
Completeness [%] | 98.7 | |
Redundancy | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 288 | Morpheus A9 10% PEG 20000 20% PEG 550 MME 0.02M divalent cations 0.1M bicine/Trizma base pH 8.5 |