6H45
crystal structure of the human TGT catalytic subunit QTRT1 in complex with queuine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97626 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 127.500, 158.860, 47.620 |
Unit cell angles | 90.00, 108.19, 90.00 |
Refinement procedure
Resolution | 48.160 - 2.400 |
R-factor | 0.2032 |
Rwork | 0.201 |
R-free | 0.23960 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.160 | 50.000 | 2.500 |
High resolution limit [Å] | 2.400 | 48.160 | 2.400 |
Rmerge | 0.049 | 0.476 | |
Rmeas | 0.058 | 0.590 | |
Total number of observations | 108869 | ||
Number of reflections | 32713 | 2730 | |
<I/σ(I)> | 17.26 | 2.26 | |
Completeness [%] | 93.1 | 67.6 | |
Redundancy | 3.328 | 2.723 | |
CC(1/2) | 0.999 | 0.847 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM Tris pH 7.8 200 mM KBr 200 mM KSCN 3 % (w/v) PGA-LM 5 % (w/v) PEG 4000 |