Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GQF

The structure of mouse AsterA (GramD1a) with 25-hydroxy cholesterol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2018-01-01
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9762
Spacegroup nameP 1 21 1
Unit cell lengths52.435, 121.012, 71.907
Unit cell angles90.00, 110.84, 90.00
Refinement procedure
Resolution67.203 - 2.900
R-factor0.2039
Rwork0.201
R-free0.25790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5yqj
RMSD bond length0.004
RMSD bond angle0.782
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]67.2033.080
High resolution limit [Å]2.9002.900
Rmerge0.1000.627
Rmeas0.1050.662
Rpim0.0330.210
Number of reflections184392958
<I/σ(I)>13.63.7
Completeness [%]99.098.7
Redundancy109.8
CC(1/2)0.9980.891
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP62930.2 M NaCl, 0.1 M sodium cacodylate pH6, 8% PEG 8000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon