6GCY
Joint neutron and x-ray crystal structure of human carbonic anhydrase IX mimic (saccharin-sugar conjugate complex)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM30A |
Synchrotron site | ESRF |
Beamline | BM30A |
Temperature [K] | 293 |
Detector technology | CCD |
Collection date | 2016-12-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.04 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 42.610, 41.940, 72.770 |
Unit cell angles | 90.00, 104.01, 90.00 |
Refinement procedure
Resolution | 29.009 - 2.000 |
R-factor | 0.1931 |
Rwork | 0.191 |
R-free | 0.21220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4riu |
RMSD bond length | 0.009 |
RMSD bond angle | 1.173 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.000 | 2.060 | 1.400 |
High resolution limit [Å] | 1.300 | 2.000 | 1.300 |
Rmerge | 0.051 | 0.469 | 0.524 |
Number of reflections | 60056 | ||
<I/σ(I)> | 22.3 | ||
Completeness [%] | 97.6 | ||
Redundancy | 7.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 1.2 M sodium citrate, 0.1 M Tris pH 8.5 in Hampton sandwich box set-ups. Drops were 150-250 uL and we set-up in a 1:1 ratio. To get the complex with SGC ligand we did "dry co-crystallization". |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 1.2 M sodium citrate, 0.1 M Tris pH 8.5 in Hampton sandwich box set-ups. Drops were 150-250 uL and we set-up in a 1:1 ratio. To get the complex with SGC ligand we did "dry co-crystallization". |