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6FR2

Soluble epoxide hydrolase in complex with LK864

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2017-09-16
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.072
Spacegroup nameI 2 2 2
Unit cell lengths80.091, 92.180, 106.998
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.090 - 2.262
R-factor0.1698
Rwork0.168
R-free0.21000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4jnc
RMSD bond length0.011
RMSD bond angle0.955
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.09046.0902.300
High resolution limit [Å]2.26020.0002.260
Rmerge0.0810.0520.788
Rmeas0.0960.0620.955
Total number of observations120149
Number of reflections35335481497
<I/σ(I)>9.421.891.71
Completeness [%]98.588.982.7
Redundancy3.43.0212.983
CC(1/2)0.9960.9950.779
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2771 uL protein solution Protein (5-10 mg/mL , 50 mM NaCl, 50 mM sodium phosphate, 10% glycerol (98%), 2 mM DTT at pH 7.4) was mixed in different ratios (2/1, 1/1, 1/2) with precipitant solution (23 %-28 % (w/v) polyethylenglycol (PEG) 6000, 70 mM ammonium acetat, 200 mM magnesium acetat, 100 mM sodium cacodylate at pH 6.1-6.5)

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PDB entries from 2024-05-15

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