6FMD
Targeting myeloid differentiation using potent human dihydroorotate dehydrogenase (hDHODH) inhibitors based on 2-hydroxypyrazolo[1,5-a]pyridine scaffold
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-08 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.97242 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 90.441, 90.441, 122.446 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 78.320 - 1.580 |
R-factor | 0.138 |
Rwork | 0.137 |
R-free | 0.15970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5mut |
RMSD bond length | 0.014 |
RMSD bond angle | 1.647 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.324 | 25.534 | 1.670 |
High resolution limit [Å] | 1.580 | 5.000 | 1.580 |
Rmerge | 0.026 | 0.740 | |
Rmeas | 0.080 | 0.029 | 0.835 |
Rpim | 0.036 | 0.013 | 0.380 |
Number of reflections | 79465 | 2684 | 11495 |
<I/σ(I)> | 11 | 21 | 1 |
Completeness [%] | 99.6 | 98.2 | 99.7 |
Redundancy | 4.6 | 4.5 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.2 | 293 | 0.2M KBr, 0.2M KSCN, 0.1M NaAc pH 5.2, 25% PEG 400, 2% PGA-LM |