6EZB
Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain Q305K mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-07 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.980105 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 72.080, 84.110, 144.350 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.610 - 2.250 |
R-factor | 0.183 |
Rwork | 0.181 |
R-free | 0.22300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xp7 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.130 |
Data reduction software | XDS (20180409) |
Data scaling software | STARANISO (1.10.15) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.610 | 2.450 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.137 | 1.609 |
Rmeas | 1.714 | |
Number of reflections | 16301 | |
<I/σ(I)> | 12.6 | 1.4 |
Completeness [%] | 93.4 | 93.53 |
Redundancy | 9.2 | 8.7 |
CC(1/2) | 0.998 | 0.385 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 292 | 2.2 M ammonium sulfate |