6EWE
Crystal structure of BCII Metallo-beta-lactamase in complex with DZ-308
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97625 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 53.190, 61.010, 69.540 |
Unit cell angles | 90.00, 92.99, 90.00 |
Refinement procedure
Resolution | 35.308 - 1.460 |
R-factor | 0.1403 |
Rwork | 0.139 |
R-free | 0.16650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tyt |
RMSD bond length | 0.013 |
RMSD bond angle | 1.227 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.310 | 1.500 |
High resolution limit [Å] | 1.460 | 1.460 |
Rmerge | 0.089 | 1.544 |
Rmeas | 0.109 | 1.845 |
Rpim | 0.043 | 0.724 |
Number of reflections | 38243 | 2839 |
<I/σ(I)> | 9.7 | 1.1 |
Completeness [%] | 99.2 | 98.6 |
Redundancy | 6.6 | 6.3 |
CC(1/2) | 0.998 | 0.440 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1MM TCEP, 5MM DZ-305, 50MM HEPES PH7.5, 100MM NACL, 0.1MM ZNCL2, 0.1M MAGNESIUM FORMATE, 25% PEG 3350 |