6EKN
Crystal structure of MMP12 in complex with inhibitor BE7.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-23 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.980035 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 51.560, 60.350, 54.560 |
Unit cell angles | 90.00, 116.10, 90.00 |
Refinement procedure
Resolution | 36.740 - 1.200 |
R-factor | 0.14574 |
Rwork | 0.144 |
R-free | 0.17523 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i03 |
RMSD bond length | 0.027 |
RMSD bond angle | 2.377 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.740 | 1.230 |
High resolution limit [Å] | 1.200 | 1.200 |
Rmeas | 0.096 | 1.800 |
Number of reflections | 46976 | 3280 |
<I/σ(I)> | 10.21 | 0.98 |
Completeness [%] | 99.3 | 94.7 |
Redundancy | 6.61 | 6.18 |
CC(1/2) | 0.998 | 0.320 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 10 | 293 | Protein: 1 micro-L MMP12 at 290 micro-M with 10 milli-M acetohydroxamate + 0.1 Micro-L BE6 from 10 milii-M in 100% DMSO Precipitant: 17% PEG 20K, 250 milli-M NaCl, 100 milii-M TRIS HCl, pH 10.0. cryoprotectant: 40% (25 % di-ethylene glycol + 25 % glycerol + 25 % 1,2-propanediol) 10 % PEG 10K, 200 milli-M NaCl, 100 milli-M AAB (Na acetate,N-(2-Acetamido)iminodiacetic acid (ADA), Bicine) 10% acid/90% basic |