6EB5
Crystal Structure of Human Protocadherin-15 EC2-3 V250N
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 77.184, 31.945, 115.955 |
Unit cell angles | 90.00, 106.40, 90.00 |
Refinement procedure
Resolution | 39.470 - 2.600 |
R-factor | 0.23393 |
Rwork | 0.232 |
R-free | 0.27039 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5uly |
RMSD bond length | 0.007 |
RMSD bond angle | 1.198 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0230) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.194 | 0.327 |
Number of reflections | 17491 | 777 |
<I/σ(I)> | 7.3 | |
Completeness [%] | 95.0 | 89.2 |
Redundancy | 4.2 | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.9 | 277 | 0.1 M MES pH 5.9, 0.15 M MgCl2, 32% PEG 400 |