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6DZH

HRAS G13D bound to GDP (H13GDP)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2014-11-25
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54178
Spacegroup nameP 21 21 21
Unit cell lengths60.571, 71.410, 94.861
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.700 - 1.950
Rwork0.163
R-free0.21800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6e6p
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX (1.11.1_2575)
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.980
High resolution limit [Å]1.9505.2901.950
Rmerge0.0920.0360.596
Rmeas0.1000.0390.695
Rpim0.0370.0140.345
Total number of observations175531
Number of reflections252561696713
<I/σ(I)>8.1
Completeness [%]82.099.747.3
Redundancy6.57.43.2
CC(1/2)0.9990.689
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5291.155.9% stabilization buffer (20 mM HEPES, 50 mM NaCl, 20 mM MgCl2, pH 7.5) 188.2 mM Calcium Acetate 18.8% PEG 3350 Crystals were grown in 2uL by 2uL drops of mother liquor to protein (7.7mg/mL) Cryoprotectant for crystal diffraction: 70% mother liquor and 30% glycerol

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PDB entries from 2024-05-15

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