6DOW
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 200 mM Rb+ for 160 s at 21 C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-24 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.8 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 82.035, 37.485, 62.504 |
Unit cell angles | 90.00, 96.84, 90.00 |
Refinement procedure
Resolution | 19.400 - 1.495 |
R-factor | 0.166 |
Rwork | 0.164 |
R-free | 0.19810 |
Starting model (for MR) | pdbid 1ZBL |
RMSD bond length | 0.008 |
RMSD bond angle | 1.032 |
Data reduction software | HKL-2000 |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.400 | 19.400 | 1.520 |
High resolution limit [Å] | 1.490 | 8.190 | 1.490 |
Rmerge | 0.030 | 0.029 | 1.276 |
Rmeas | 0.042 | 0.041 | 1.805 |
Rpim | 0.030 | 0.029 | 1.276 |
Total number of observations | 58729 | ||
Number of reflections | 30351 | 190 | 1109 |
<I/σ(I)> | 8.9 | ||
Completeness [%] | 98.6 | 91.5 | 73.4 |
Redundancy | 1.9 | 1.8 | 1.9 |
CC(1/2) | 0.999 | 0.989 | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2 |