Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DO5

KLHDC2 ubiquitin ligase in complex with USP1 C-end degron

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyCCD
Collection date2017-11-30
DetectorADSC QUANTUM 315r
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths44.496, 87.086, 88.322
Unit cell angles90.00, 104.56, 90.00
Refinement procedure
Resolution43.067 - 2.500
R-factor0.2029
Rwork0.200
R-free0.25250
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2vpj
RMSD bond length0.013
RMSD bond angle1.303
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.240
High resolution limit [Å]2.2005.9702.200
Rmerge0.1190.0550.527
Rmeas0.1300.0600.604
Rpim0.0530.0240.287
Number of reflections3263417321338
<I/σ(I)>6.6
Completeness [%]98.099.980.3
Redundancy5.96.13.8
CC(1/2)0.9970.714
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298.150.03M MgCl2*6H2O, 0.03M CaCl2*2H2O, 0.05M Imidazole, 0.05M MES monohydrate, 12.5% v/v MPD, 12.5% PEG1000, 12.5% w/v PEG3350, pH 6.5.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon