6DO5
KLHDC2 ubiquitin ligase in complex with USP1 C-end degron
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-30 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.496, 87.086, 88.322 |
Unit cell angles | 90.00, 104.56, 90.00 |
Refinement procedure
Resolution | 43.067 - 2.500 |
R-factor | 0.2029 |
Rwork | 0.200 |
R-free | 0.25250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vpj |
RMSD bond length | 0.013 |
RMSD bond angle | 1.303 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.970 | 2.200 |
Rmerge | 0.119 | 0.055 | 0.527 |
Rmeas | 0.130 | 0.060 | 0.604 |
Rpim | 0.053 | 0.024 | 0.287 |
Number of reflections | 32634 | 1732 | 1338 |
<I/σ(I)> | 6.6 | ||
Completeness [%] | 98.0 | 99.9 | 80.3 |
Redundancy | 5.9 | 6.1 | 3.8 |
CC(1/2) | 0.997 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298.15 | 0.03M MgCl2*6H2O, 0.03M CaCl2*2H2O, 0.05M Imidazole, 0.05M MES monohydrate, 12.5% v/v MPD, 12.5% PEG1000, 12.5% w/v PEG3350, pH 6.5. |