6DD4
Crystal Structure of the Human vaccinia-related kinase bound to a N,N-dipropyl-dihydropteridine inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.968610 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 91.596, 96.168, 191.871 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.960 - 2.100 |
R-factor | 0.19622 |
Rwork | 0.195 |
R-free | 0.22555 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3op5 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.498 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.960 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.106 | 1.157 |
Rpim | 0.066 | 0.736 |
Number of reflections | 99522 | 4898 |
<I/σ(I)> | 11.9 | 1.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.7 | 6.5 |
CC(1/2) | 0.998 | 0.687 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 27.5% PEG3350, 200 mM LiSO4, 0.1M SBG, pH 7.0 |