6CVS
Human Aprataxin (Aptx) L248M bound to DNA, AMP and Zn product
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-11-03 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.384, 116.316, 117.559 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.889 - 2.110 |
R-factor | 0.175 |
Rwork | 0.174 |
R-free | 0.19640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ndf |
RMSD bond length | 0.004 |
RMSD bond angle | 0.611 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.190 |
High resolution limit [Å] | 2.110 | 4.540 | 2.110 |
Rmerge | 0.106 | 0.055 | 0.583 |
Number of reflections | 31283 | 3160 | 3087 |
<I/σ(I)> | 6.8 | ||
Completeness [%] | 95.4 | 89.8 | 96.9 |
Redundancy | 4.7 | 4.7 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277 | 100 mM MES, 25% w/v polyethylene glycol 4000 |