6CRB
Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CF2, beta, gamma dATP analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-04-10 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.763, 78.772, 54.472 |
Unit cell angles | 90.00, 108.78, 90.00 |
Refinement procedure
Resolution | 19.973 - 2.151 |
R-factor | 0.2227 |
Rwork | 0.217 |
R-free | 0.27480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.009 |
RMSD bond angle | 1.269 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.190 |
High resolution limit [Å] | 2.150 | 5.790 | 2.150 |
Rmerge | 0.074 | 0.031 | 0.457 |
Total number of observations | 81066 | ||
Number of reflections | 22684 | 1241 | 879 |
<I/σ(I)> | 7.8 | ||
Completeness [%] | 95.0 | 99.8 | 72.3 |
Redundancy | 3.6 | 3.7 | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16-18% PEG 3350 |