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6CQA

E. coli DHFR complex with inhibitor AMPQD

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2018-03-06
DetectorRAYONIX MX-225
Wavelength(s)0.97931
Spacegroup nameP 61 2 2
Unit cell lengths64.651, 64.651, 215.726
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.175 - 2.200
R-factor0.2269
Rwork0.223
R-free0.25920
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7dfr
RMSD bond length0.006
RMSD bond angle1.009
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]34.17534.1752.050
High resolution limit [Å]1.9405.8001.940
Rmerge0.1280.0334.488
Rmeas0.1320.0345.487
Total number of observations250532
Number of reflections178239261198
<I/σ(I)>15.8168.190.23
Completeness [%]85.299.136.6
Redundancy14.05717.2052.409
CC(1/2)0.9991.0000.137
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP3.5293.158-10mg/ml protein with 80uM AMPQD and 0.5mM NADPH in 50mM HEPES pH 7.3, 100mM NaCl (concentrated after dialysis), mixed at 1:1 v/v ratio with reservoir solution of 0.1M Citrate pH 3.5, 15% PEG6000, 150mM Lithium sulfate

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PDB entries from 2024-05-15

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