6CQA
E. coli DHFR complex with inhibitor AMPQD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-03-06 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97931 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 64.651, 64.651, 215.726 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.175 - 2.200 |
R-factor | 0.2269 |
Rwork | 0.223 |
R-free | 0.25920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7dfr |
RMSD bond length | 0.006 |
RMSD bond angle | 1.009 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.175 | 34.175 | 2.050 |
High resolution limit [Å] | 1.940 | 5.800 | 1.940 |
Rmerge | 0.128 | 0.033 | 4.488 |
Rmeas | 0.132 | 0.034 | 5.487 |
Total number of observations | 250532 | ||
Number of reflections | 17823 | 926 | 1198 |
<I/σ(I)> | 15.81 | 68.19 | 0.23 |
Completeness [%] | 85.2 | 99.1 | 36.6 |
Redundancy | 14.057 | 17.205 | 2.409 |
CC(1/2) | 0.999 | 1.000 | 0.137 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 3.5 | 293.15 | 8-10mg/ml protein with 80uM AMPQD and 0.5mM NADPH in 50mM HEPES pH 7.3, 100mM NaCl (concentrated after dialysis), mixed at 1:1 v/v ratio with reservoir solution of 0.1M Citrate pH 3.5, 15% PEG6000, 150mM Lithium sulfate |