6CJA
Crystal structure of Cystathionine beta-lyase from Legionella pneumophila Philadelphia 1 in complex with Alanyl-PLP and Serine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-24 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 96.170, 97.110, 175.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.803 - 1.700 |
R-factor | 0.141 |
Rwork | 0.141 |
R-free | 0.16800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | LLP bound structure |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((dev_3026)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.803 | 46.803 | 1.740 |
High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
Rmerge | 0.073 | 0.037 | 0.497 |
Rmeas | 0.077 | 0.038 | 0.569 |
Number of reflections | 180706 | 2230 | 13141 |
<I/σ(I)> | 18.16 | 48.19 | 2.31 |
Completeness [%] | 99.9 | 99.5 | 99.2 |
Redundancy | 9.086 | 13.495 | 4.272 |
CC(1/2) | 0.999 | 0.999 | 0.789 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 285 | Molecular Dimensions Morpheus screen H11: 10% w/v PEG 4000, 20% v/v glycerol: 20mM of each sodium L-glutamate, DL-alanine, glycine, DL-lysine HCl, DL-serine: 100mM bicine/Trizma base pH 8.5: LepnA.00906.a.B1.PS38320 at 18.01mg/ml: cryo: direct: tray 295502 H11: puck MWL3-7 |