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6CJA

Crystal structure of Cystathionine beta-lyase from Legionella pneumophila Philadelphia 1 in complex with Alanyl-PLP and Serine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2017-10-24
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths96.170, 97.110, 175.820
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.803 - 1.700
R-factor0.141
Rwork0.141
R-free0.16800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)LLP bound structure
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX ((dev_3026))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.80346.8031.740
High resolution limit [Å]1.7007.6001.700
Rmerge0.0730.0370.497
Rmeas0.0770.0380.569
Number of reflections180706223013141
<I/σ(I)>18.1648.192.31
Completeness [%]99.999.599.2
Redundancy9.08613.4954.272
CC(1/2)0.9990.9990.789
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8285Molecular Dimensions Morpheus screen H11: 10% w/v PEG 4000, 20% v/v glycerol: 20mM of each sodium L-glutamate, DL-alanine, glycine, DL-lysine HCl, DL-serine: 100mM bicine/Trizma base pH 8.5: LepnA.00906.a.B1.PS38320 at 18.01mg/ml: cryo: direct: tray 295502 H11: puck MWL3-7

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PDB entries from 2024-05-15

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