6CHB
Crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and IOMA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 176.752, 176.752, 458.039 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.631 - 6.801 |
R-factor | 0.3232 |
Rwork | 0.318 |
R-free | 0.41670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t3z 5ud9 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.717 |
Data reduction software | XDS |
Data scaling software | Aimless (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.700 | 39.700 | 7.020 |
High resolution limit [Å] | 6.660 | 21.070 | 6.660 |
Rmerge | 0.333 | 0.090 | 4.752 |
Rmeas | 0.347 | 0.095 | 4.954 |
Rpim | 0.097 | 0.029 | 1.365 |
Number of reflections | 13894 | 430 | 1890 |
<I/σ(I)> | 6.4 | ||
Completeness [%] | 98.7 | 83.6 | 95 |
Redundancy | 12.4 | 9.6 | 12.5 |
CC(1/2) | 0.988 | 0.993 | 0.334 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 5% Tacismate pH 8.0, 15% PEG 3350 |