6CBP
Crystal structure of the single chain variable fragment of the DH270.6 bnAb in complex with the Man9-V3 glycopeptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-27 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97925 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 68.005, 68.005, 128.835 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.141 - 2.170 |
R-factor | 0.224 |
Rwork | 0.221 |
R-free | 0.27780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tqa |
RMSD bond length | 0.006 |
RMSD bond angle | 0.934 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.141 | 2.248 |
High resolution limit [Å] | 2.170 | 2.170 |
Number of reflections | 15878 | 5929 |
<I/σ(I)> | 7.65 | |
Completeness [%] | 95.1 | |
Redundancy | 4.9 | |
CC(1/2) | 0.982 | 0.417 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | 30% PEG8000, 10 mM CHES, 1 M sodium chloride, pH 9.0 |