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6AX4

Plk-1 polo-box domain in complex with histidine N(tau)-cyclized Macrocycle 5b.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyCCD
Collection date2016-12-04
DetectorADSC QUANTUM 315
Wavelength(s)0.97917
Spacegroup nameP 1 21 1
Unit cell lengths35.449, 51.294, 58.034
Unit cell angles90.00, 100.84, 90.00
Refinement procedure
Resolution17.408 - 1.450
R-factor0.1338
Rwork0.132
R-free0.16560
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4dfw
RMSD bond length0.009
RMSD bond angle1.048
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]17.408100.0001.480
High resolution limit [Å]1.4503.9401.450
Rmerge0.0660.0410.628
Rmeas0.0730.0460.709
Rpim0.0310.0200.326
Total number of observations196289
Number of reflections3614418251797
<I/σ(I)>8.6
Completeness [%]99.496.999.1
Redundancy5.45.34.6
CC(1/2)0.9970.769
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291Well solution: 0.2 M Calcium Chloride, 12.5% PEG-3350 Protein: 10 mg/ml PBD-macrocycle complex in 0.5 M Sodium Chloride, 10 mM TRIS pH 8.0, 0.4 M ammonium acetate 1:1 mix of protein complex and well solution

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PDB entries from 2024-05-15

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