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6AX1

Structure of human monoacylglycerol lipase bound to a covalent inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2013-06-02
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameI 2 2 2
Unit cell lengths86.360, 126.900, 137.510
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution93.260 - 2.260
R-factor0.1647
Rwork0.163
R-free0.19840
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.010
RMSD bond angle1.080
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.16)
Phasing softwareBUSTER-TNT
Refinement softwareBUSTER (2.11.5)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]93.25893.2582.380
High resolution limit [Å]2.2607.1502.260
Rmerge0.0710.428
Rmeas0.1180.0860.529
Rpim0.0470.0350.308
Total number of observations20256773479403
Number of reflections3439612364041
<I/σ(I)>10.923.72.1
Completeness [%]96.499.979
Redundancy5.95.92.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP298Reservoir Buffer: 0.07M sodium cacodylate pH 5.1-5.9 and 33-51% MPD The protein is 20 mg/mL in a buffer of 15 mM HEPES pH 8.2; 2 mM TCEP; and 10% glycerol, with hexaethylene glycol monododecyl ether added to 0.1 mM. Apo protein crystals obtained in this manner were transferred to a cryo-protectant solution consisting of 70 mM NaCacodylate pH 5.1; 10% MPD; 30% PEG-MME-2K, and 1mM of inhibitor compound. Crystals were soaked overnight, then flash-frozen in LN2.

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PDB entries from 2024-05-15

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