6APC
Crystal Structure of Infant Antibody ADI-19425
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2015-12-18 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 61.230, 66.530, 125.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.070 - 1.700 |
R-factor | 0.1757 |
Rwork | 0.174 |
R-free | 0.20360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3eyq 3h42 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.667 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX (1.11.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 26.070 | 26.070 | 1.730 |
High resolution limit [Å] | 1.700 | 9.000 | 1.700 |
Rmerge | 0.069 | 0.079 | 0.328 |
Rmeas | 0.075 | 0.088 | 0.363 |
Rpim | 0.028 | 0.038 | 0.153 |
Number of reflections | 57347 | 440 | 2940 |
<I/σ(I)> | 16.8 | ||
Completeness [%] | 99.9 | 95.6 | 99.4 |
Redundancy | 6.8 | 4.9 | 5.5 |
CC(1/2) | 0.998 | 0.990 | 0.930 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 50 nL of ADI-19425 Fab at 8.78 mg/ml, 50 nL of crystal seed solution, and 100 nL of reservoir solution containing 1.5 M Ammonium sulfate, 0.1 M sodium chloride, and 0.1 M BisTris pH 6.5 |