6AJG
Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with SQ109
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97950 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.009, 143.536, 143.612 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.375 - 2.604 |
R-factor | 0.218 |
Rwork | 0.216 |
R-free | 0.24820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ajf |
RMSD bond length | 0.005 |
RMSD bond angle | 1.000 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 101.522 | 29.375 | 2.750 |
High resolution limit [Å] | 2.604 | 8.240 | 2.604 |
Rmerge | 0.023 | 0.709 | |
Rmeas | 0.053 | 0.027 | 0.806 |
Rpim | 0.024 | 0.012 | 0.376 |
Number of reflections | 54850 | 1754 | 7805 |
<I/σ(I)> | 16.6 | 19.1 | 1.1 |
Completeness [%] | 98.7 | 93.1 | 96.7 |
Redundancy | 4.4 | 4.1 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 10%-20% (v/v) polyethylene glycol monomethyl ether 350 (PEGMME 350), 50 mM ADA (N-(2-Acetamido) iminodiacetic acid) (pH 6.0-7.0) and 7.5%-17.5% (v/v) polyethylene glycol 2000 (PEG2000) |