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6AJG

Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with SQ109

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2017-01-21
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97950
Spacegroup nameP 21 21 21
Unit cell lengths87.009, 143.536, 143.612
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.375 - 2.604
R-factor0.218
Rwork0.216
R-free0.24820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ajf
RMSD bond length0.005
RMSD bond angle1.000
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.21)
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]101.52229.3752.750
High resolution limit [Å]2.6048.2402.604
Rmerge0.0230.709
Rmeas0.0530.0270.806
Rpim0.0240.0120.376
Number of reflections5485017547805
<I/σ(I)>16.619.11.1
Completeness [%]98.793.196.7
Redundancy4.44.14.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP28910%-20% (v/v) polyethylene glycol monomethyl ether 350 (PEGMME 350), 50 mM ADA (N-(2-Acetamido) iminodiacetic acid) (pH 6.0-7.0) and 7.5%-17.5% (v/v) polyethylene glycol 2000 (PEG2000)

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PDB entries from 2024-05-15

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