6AB2
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oClZLys
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B2 |
Synchrotron site | SPring-8 |
Beamline | BL26B2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-06 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 101.419, 43.887, 72.386 |
Unit cell angles | 90.00, 119.45, 90.00 |
Refinement procedure
Resolution | 35.071 - 1.400 |
R-factor | 0.1712 |
Rwork | 0.170 |
R-free | 0.19780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zim |
RMSD bond length | 0.006 |
RMSD bond angle | 1.047 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.440 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmeas | 0.058 | |
Rpim | 0.021 | 0.161 |
Number of reflections | 53399 | 2623 |
<I/σ(I)> | 34.5 | |
Completeness [%] | 97.5 | |
Redundancy | 7.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 281 | Tris-HCl (pH 8.5), PEG 200, KCl, MgCl2, sodium citrate |