6A7V
Crystal structure of Mycobacterium tuberculosis VapBC11 toxin-antitoxin complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-01 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.0723 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.555, 127.007, 151.207 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 97.250 - 1.670 |
R-factor | 0.1843 |
Rwork | 0.183 |
R-free | 0.20860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4chg |
RMSD bond length | 0.009 |
RMSD bond angle | 1.298 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (3.3.22) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 97.252 | 47.946 | 1.760 |
High resolution limit [Å] | 1.670 | 5.280 | 1.670 |
Rmerge | 0.021 | 0.881 | |
Rmeas | 0.050 | 0.024 | 0.999 |
Rpim | 0.023 | 0.012 | 0.461 |
Total number of observations | 517561 | 16587 | 71241 |
Number of reflections | 113379 | 3887 | 16176 |
<I/σ(I)> | 15.7 | 51.2 | 1.4 |
Completeness [%] | 99.7 | 99.2 | 98.8 |
Redundancy | 4.6 | 4.3 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 293 | 0.1M Ammonium Sulphate, 0.3M Sodium formate, 0.1 Sodium cacodylate, 3 % w/v PGA-LM, 30% PEG400 (pH 6.5) |