5ZUV
Crystal Structure of the Human Coronavirus 229E HR1 motif in complex with pan-CoVs inhibitor EK1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9785 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 95.515, 45.548, 94.737 |
Unit cell angles | 90.00, 96.33, 90.00 |
Refinement procedure
Resolution | 31.390 - 2.210 |
R-factor | 0.2042 |
Rwork | 0.202 |
R-free | 0.24809 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bez |
RMSD bond length | 0.010 |
RMSD bond angle | 1.259 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX (1.10.1) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.400 | 2.290 |
High resolution limit [Å] | 2.210 | 2.210 |
Rmeas | 0.087 | 0.217 |
Rpim | 0.040 | 0.097 |
Number of reflections | 20441 | 1954 |
<I/σ(I)> | 18.9 | |
Completeness [%] | 99.4 | 99.5 |
Redundancy | 4.7 | 4.5 |
CC(1/2) | 0.979 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.5 | 293 | 0.05M MgCl2, 0.1M HEPES, pH 7.5, 30% PEG550MME |