5ZF1
Molecular structure of a novel 5,10-methylenetetrahydrofolate dehydrogenase from the silkworm, Bombyx mori
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-15 |
Detector | AGILENT EOS CCD |
Wavelength(s) | 0.9 |
Spacegroup name | P 43 |
Unit cell lengths | 89.789, 89.789, 127.306 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.295 - 1.750 |
R-factor | 0.2127 |
Rwork | 0.211 |
R-free | 0.24090 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.869 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.300 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.057 | 0.487 |
Number of reflections | 100729 | |
<I/σ(I)> | 52.3 | |
Completeness [%] | 99.3 | |
Redundancy | 7.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, 30% PEG 8000 |