5Z20
The ternary structure of D-lactate dehydrogenase from Pseudomonas aeruginosa with NADH and oxamate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-01-31 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 155.690, 155.690, 230.011 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.400 - 2.200 |
R-factor | 0.17206 |
Rwork | 0.171 |
R-free | 0.19891 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1j49 |
RMSD bond length | 0.019 |
RMSD bond angle | 1.857 |
Data scaling software | SCALA |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.400 | 2.320 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.129 | 0.805 |
Rpim | 0.045 | 0.293 |
Number of reflections | 161477 | 22650 |
<I/σ(I)> | 13.8 | 2.5 |
Completeness [%] | 98.8 | 95.8 |
Redundancy | 8.3 | 7.1 |
CC(1/2) | 0.997 | 0.790 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 1 mM NADH, 10 mM oxamate, 100 mM sodium formate, 10% PEG 3350 |