5YVU
Crystal structures of unlinked full length NS3 from Dengue virus provide insights into dynamics of protease domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-22 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.059, 85.627, 85.508 |
Unit cell angles | 90.00, 97.95, 90.00 |
Refinement procedure
Resolution | 47.704 - 2.491 |
R-factor | 0.2241 |
Rwork | 0.222 |
R-free | 0.26590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vbc |
RMSD bond length | 0.002 |
RMSD bond angle | 0.646 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.700 | 2.580 |
High resolution limit [Å] | 2.491 | 2.491 |
Rmerge | 0.118 | 0.545 |
Rmeas | 0.139 | 0.139 |
Number of reflections | 50500 | 2458 |
<I/σ(I)> | 14.03 | 1.87 |
Completeness [%] | 94.8 | 92.82 |
Redundancy | 3.4 | 3.2 |
CC(1/2) | 0.917 | 0.799 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291 | 0.1M MES pH 6.4, 12% PEG6000 |