Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YLB

Crystal structure of Ofd2 from Schizosaccharomyces pombe at 1.80 A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2013-11-17
DetectorADSC QUANTUM 315r
Wavelength(s)0.97907
Spacegroup nameI 2 2 2
Unit cell lengths70.506, 80.386, 81.996
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution57.400 - 1.790
R-factor0.1876
Rwork0.185
R-free0.23290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3thp
RMSD bond length0.012
RMSD bond angle1.180
Data reduction softwareDENZO
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 Overall
Low resolution limit [Å]57.400
High resolution limit [Å]1.790
Rmerge0.079
Number of reflections20695
<I/σ(I)>2.69
Completeness [%]99.9
Redundancy8.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP728918% MPEG 5000, 0.1M HEPES,pH7.0

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon