5YJG
Structural insights into periostin functions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-18 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.987 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 105.605, 105.605, 331.225 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.143 - 2.399 |
R-factor | 0.2133 |
Rwork | 0.211 |
R-free | 0.24750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ltb |
RMSD bond length | 0.002 |
RMSD bond angle | 0.538 |
Data scaling software | HKL-3000 |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.440 |
High resolution limit [Å] | 2.399 | 2.399 |
Rmerge | 0.108 | 0.689 |
Rmeas | 0.111 | 0.714 |
Rpim | 0.026 | 0.179 |
Number of reflections | 43825 | 2039 |
<I/σ(I)> | 45.3 | 3 |
Completeness [%] | 99.7 | 95.8 |
Redundancy | 18.5 | 14.2 |
CC(1/2) | 0.931 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Ammonium Sulfate, MES |