5YIP
Crystal Structure of AnkG LIR/GABARAPL1 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97774 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 104.172, 104.172, 63.901 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.118 - 1.850 |
R-factor | 0.1832 |
Rwork | 0.181 |
R-free | 0.22220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2r2q |
RMSD bond length | 0.011 |
RMSD bond angle | 1.113 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.880 |
High resolution limit [Å] | 1.850 | 5.020 | 1.850 |
Rmerge | 0.084 | 0.046 | |
Rmeas | 0.087 | 0.048 | |
Rpim | 0.022 | 0.012 | 0.280 |
Number of reflections | 18077 | 1030 | 898 |
<I/σ(I)> | 4.1 | ||
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 15.9 | 14 | 14.1 |
CC(1/2) | 0.999 | 0.887 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 4.6 | 289 | 35% w/v Pentaerythritol ethoxylate 797 (15/4 EO/OH), 0.2 M ammonium sulfate, 0.1 M sodium acetate (pH 4.6) |