5YCC
Crystal structure of Notothenia coriiceps adenylate kinase variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-29 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97933 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 105.200, 105.200, 83.779 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.347 - 2.700 |
R-factor | 0.1709 |
Rwork | 0.168 |
R-free | 0.22250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5x6k |
RMSD bond length | 0.008 |
RMSD bond angle | 1.160 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rpim | 0.036 | 0.204 |
Number of reflections | 13506 | 1313 |
<I/σ(I)> | 22.1 | 4.3 |
Completeness [%] | 99.9 | 100 |
Redundancy | 16 | 16.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.14M Lithium sulfate, 45% PEG400, 0.1M ACETATE pH4.0 |