5Y35
Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-03 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 82.836, 85.105, 103.046 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.751 - 1.994 |
R-factor | 0.2177 |
Rwork | 0.216 |
R-free | 0.24390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gpi |
RMSD bond length | 0.009 |
RMSD bond angle | 1.202 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (phenix.refine: 1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.060 |
High resolution limit [Å] | 1.990 | 4.290 | 1.990 |
Rmerge | 0.171 | 0.083 | 0.974 |
Rmeas | 0.173 | 0.093 | |
Rpim | 0.074 | 0.040 | 0.384 |
Total number of observations | 320116 | ||
Number of reflections | 47888 | 5249 | 4960 |
<I/σ(I)> | 6.1 | ||
Completeness [%] | 95.3 | 98.8 | 100 |
Redundancy | 6.7 | 5.6 | 7.3 |
CC(1/2) | 0.990 | 0.738 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | MES, pH 6.0, PEG3350 |