Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5Y06

Structural characterization of msmeg_4306 from Mycobacterium smegmatis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2016-11-07
DetectorMAR scanner 345 mm plate
Wavelength(s)1.5418
Spacegroup nameP 31 2 1
Unit cell lengths76.600, 76.600, 84.811
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution66.338 - 2.606
R-factor0.2419
Rwork0.240
R-free0.27130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5y05
RMSD bond length0.001
RMSD bond angle0.363
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (dev_2614)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]66.3402.710
High resolution limit [Å]2.5902.590
Rmerge0.0930.621
Rpim0.0340.230
Number of reflections9152955
<I/σ(I)>16.4
Completeness [%]98.285.1
Redundancy8.47.9
CC(1/2)0.9900.700
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.529320% PEG 8000, 5% PEG 2000 MME, 0.1 M Tris-HCl pH 8.5, 0.1 M magnesium formate

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon