5XDQ
Bovine heart cytochrome c oxidase in the fully oxidized state with pH 7.3 at 1.77 angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 50 |
Detector technology | CCD |
Collection date | 2014-07-09 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 183.307, 205.904, 177.526 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 134.453 - 1.770 |
R-factor | 0.1652 |
Rwork | 0.164 |
R-free | 0.19040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1v54 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.203 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 200.000 | 200.000 | 1.790 |
High resolution limit [Å] | 1.770 | 6.050 | 1.770 |
Rmerge | 0.086 | 0.057 | |
Total number of observations | 5739764 | ||
Number of reflections | 643861 | ||
<I/σ(I)> | 13 | ||
Completeness [%] | 99.9 | 97.9 | 100 |
Redundancy | 8.9 | 9.4 | 8.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 7.3 | 277 | 3% polythylene glycol (PEG), 0.35% decal maltose, 0.70% fluorinated octyl-maltoside, 33mM sodium acetate, 25mM Tris-HCL (pH 7.3) |